Multiblock object

A common object type for many multiblock methods.

multiblock

multiblock

scores(<multiblock>) loadings(<multiblock>) print(<multiblock>) summary(<multiblock>)

Result Functions for Multiblock Objects

scoreplot(<multiblock>) loadingplot(<multiblock>) loadingweightplot() biplot(<multiblock>) corrplot()

Plot Functions for Multiblock Objects

Basic methods

Single- and two-block methods

basic

Single- and Two-Block Methods

pca()

Principal Component Analysis - PCA

reexports pcr plsr MSEP R2 RMSEP coefplot cvsegments loading.weights loadingplot loadings mvrValstats predplot scoreplot scores validationplot

Objects exported from other packages

cca()

Canonical Correlation Analysis - CCA

ifa()

Inter-battery Factor Analysis - IFA

gsvd()

Generalised Singular Value Decomposition - GSVD

Unsupervised methods

unsupervised

Unsupervised Multiblock Methods

sca()

Simultaneous Component Analysis - SCA

gca()

Generalized Canonical Analysis - GCA

gpa()

Generalized Procrustes Analysis - GPA

mfa()

Multiple Factor Analysis - MFA

pcagca()

PCA-GCA

disco()

Distinctive and Common Components with SCA - DISCO

hpca()

Hierarchical Principal component analysis - HPCA

mcoa()

Multiple Co-Inertia Analysis - MCOA

jive()

Joint and Individual Variation Explained - JIVE

statis()

Structuration des Tableaux à Trois Indices de la Statistique - STATIS

hogsvd()

Higher Order Generalized SVD - HOGSVD

Supervised methods

supervised

Supervised Multiblock Methods

mbpls()

Multiblock Partial Least Squares - MB-PLS

smbpls()

Sparse Multiblock Partial Least Squares - sMB-PLS

sopls()

Sequential and Orthogonalized PLS (SO-PLS)

predict(<sopls>) coef(<sopls>) print(<sopls>) summary(<sopls>) classify() R2(<sopls>) RMSEP(<sopls>) pcp() cvanova() print(<cvanova>) summary(<cvanova>) plot(<cvanova>)

Result functions for SO-PLS models

loadings(<sopls>) scores(<sopls>) scoreplot(<sopls>) loadingplot(<sopls>) corrplot(<sopls>) biplot(<sopls>)

Scores, loadings and plots for sopls objects

maage() maageSeq()

Måge plot

popls()

Parallel and Orthogonalised Partial Least Squares - PO-PLS

rosa()

Response Oriented Sequential Alternation - ROSA

predict(<rosa>) coef(<rosa>) print(<rosa>) summary(<rosa>) blockexpl() print(<rosaexpl>) rosa.classify() scores(<rosa>) loadings(<rosa>)

Result functions for ROSA models

image(<rosa>) barplot(<rosa>)

Plotting functions for ROSA models

mbrda()

Multiblock Redundancy Analysis - mbRDA

Complex methods

complex

Methods With Complex Linkage

lpls()

L-PLS regression

plot(<lpls>) predict(<lpls>) lplsCV()

Result functions for L-PLS objects (lpls)

lplsData()

L-PLS data simulation for exo-type analysis

sopls_pm() print(<SO_TDI>) sopls_pm_multiple() print(<SO_TDI_multiple>)

Total, direct, indirect and additional effects in SO-PLS-PM.

ASCA

asca()

Analysis of Variance Simultaneous Component Analysis - ASCA

print(<asca>) summary(<asca>) print(<summary.asca>) loadings(<asca>) scores(<asca>) projections()

ASCA Result Methods

loadingplot(<asca>) scoreplot(<asca>)

ASCA Result Methods

Utility functions

block.data.frame()

Block-wise indexable data.frame

compnames()

Vector of component names

dummycode()

Dummy-coding of a single vector

explvar()

Explained predictor variance

mcolors()

Colour palette generation from matrix of RGB values

reexports pcr plsr MSEP R2 RMSEP coefplot cvsegments loading.weights loadingplot loadings mvrValstats predplot scoreplot scores validationplot

Objects exported from other packages

unique_combos()

Unique combinations of blocks

Datasets

candies

Sensory assessment of candies.

potato

Sensory, rheological, chemical and spectroscopic analysis of potatoes.

simulated

Data simulated to have certain characteristics.

wine

Wines of Val de Loire